VU Biotechnologijos institutas - Mokslo publikacijos

BVTS - Mokslo publikacijos

AJE 01

Straipsnių kalbos taisymui siūlome American Journal Experts

Zakšauskas, A., Čapkauskaitė, E., Jezepčikas, L., Linkuvienė, V., Paketurytė, V., Smirnov, A., Leitans, J., Kazaks, A., Dvinskis, E., Manakova, E., Gražulis, S., Tars, K., Matulis, D., 2020. Halogenated and di-substituted benzenesulfonamides as selective inhibitors of carbonic anhydrase isoforms. European Journal of Medicinal Chemistry 185:111825.

Vaškevičienė, I., Paketurytė, V., Pajanok, N., Žukauskas, Š., Sapijanskaitė, B., Kantminienė, K., Mickevičius, V., Zubrienė, A., Matulis, D., 2019. Pyrrolidinone-bearing methylated and halogenated benzenesulfonamides as inhibitors of carbonic anhydrases. Bioorganic & Medicinal Chemistry 27:322–337.

Stravinskiene, D., Imbrasaite, A., Petrikaite, V., Matulis, D., Matuliene, J., Zvirbliene, A., 2019. New Monoclonal Antibodies for a Selective Detection of Membrane-Associated and Soluble Forms of Carbonic Anhydrase IX in Human Cell Lines and Biological Samples. Biomolecules 9:304.

Paketurytė, V., Linkuvienė, V., Krainer, G., Chen, W.-Y., Matulis, D., 2019. Repeatability, precision, and accuracy of the enthalpies and Gibbs energies of a protein–ligand binding reaction measured by isothermal titration calorimetry. European Biophysics Journal 48:139–152.

Ragaliauskas, T., Plečkaitytė, M., Jankunec, M., Labanauskas, L., Baranauskiene, L., Valincius, G., 2019. Inerolysin and vaginolysin, the cytolysins implicated in vaginal dysbiosis, differently impair molecular integrity of phospholipid membranes. Scientific Reports 9:10606.

Simon, R.P., Rumpf, T., Linkuviene, V., Matulis, D., Akhtar, A., Jung, M., 2019. Cofactor Analogues as Active Site Probes in Lysine Acetyltransferases. Journal of Medicinal Chemistry 62:2582–2597.

Skvarnavičius, G., Dvareckas, D., Matulis, D., Petrauskas, V., 2019. Thermodynamics of Interactions Between Charged Surfactants and Ionic Poly(amino acids) by Isothermal Titration Calorimetry. ACS Omega 4:17527–17535.

Kuo, T.-C., Huang, Y.-C., Matulis, D., Chen, W.-Y., 2019. Molecular self-interactions of ribonuclease A revealed by isothermal titration calorimetry and self-interaction chromatography – Effects of anisotropy of protein surface charges. Journal of the Taiwan Institute of Chemical Engineers 96:74–81.

Zubrienė, A., Linkuvienė, V., Matulis, D., 2019. Maps of Correlations Between Compound Chemical Structures and Thermodynamics of Binding to 12 Human Carbonic Anhydrases: Towards Isoform-Selective Inhibitors, in: Matulis, D. (Ed.), Carbonic Anhydrase as Drug Target: Thermodynamics and Structure of Inhibitor Binding. Springer International Publishing, Cham:233–247.

Baranauskiene, L., Kuo, T.-C., Chen, W.-Y., Matulis, D., 2019. Isothermal titration calorimetry for characterization of recombinant proteins. Current Opinion in Biotechnology 55:9–15.

Daunys, S., Matulis, D., Petrikaitė, V., 2019. Synergistic activity of Hsp90 inhibitors and anticancer agents in pancreatic cancer cell cultures. Scientific Reports 9.

Kairys, V., Baranauskiene, L., Kazlauskiene, M., Matulis, D., Kazlauskas, E., 2019. Binding affinity in drug design: experimental and computational techniques. Expert Opinion on Drug Discovery:1–14.

Kazokaitė, J., Kairys, V., Smirnovienė, J., Smirnov, A., Manakova, E., Tolvanen, M., Parkkila, S., Matulis, D., 2019. Engineered Carbonic Anhydrase VI-Mimic Enzyme Switched the Structure and Affinities of Inhibitors. Sci Rep 9:12710.

Čapkauskaitė, E., Zakšauskas, A., Ruibys, V., Linkuvienė, V., Paketurytė, V., Gedgaudas, M., Kairys, V., Matulis, D., 2018. Benzimidazole design, synthesis, and docking to build selective carbonic anhydrase VA inhibitors. Bioorganic & Medicinal Chemistry 26:675–687.

Čapkauskaitė, E., Zubrienė, A., Paketurytė, V., Timm, D.D., Tumkevičius, S., Matulis, D., 2018. Thiazole-substituted benzenesulfonamides as inhibitors of 12 human carbonic anhydrases. Bioorg. Chem. 77:534–541.

Janulaitiene, M., Gegzna, V., Baranauskiene, L., Bulavaitė, A., Simanavicius, M., Pleckaityte, M., 2018. Phenotypic characterization of Gardnerella vaginalis subgroups suggests differences in their virulence potential. PLOS ONE 13:e0200625.

Kazokaitė, J., Niemans, R., Dudutienė, V., Becker, H.M., Leitāns, J., Zubrienė, A., Baranauskienė, L., Gondi, G., Zeidler, R., Matulienė, J., Tārs, K., Yaromina, A., Lambin, P., Dubois, L.J., Matulis, D., 2018. Novel fluorinated carbonic anhydrase IX inhibitors reduce hypoxia-induced acidification and clonogenic survival of cancer cells. Oncotarget 9.

Kuo, T.-C., Huang, Y.-C., Matulis, D., Chen, W.-Y., 2018. Molecular self-interactions of ribonuclease A revealed by isothermal titration calorimetry and self-interaction chromatography – Effects of anisotropy of protein surface charges. Journal of the Taiwan Institute of Chemical Engineers.

Linkuvienė, V., Talibov, V.O., Danielson, U.H., Matulis, D., 2018. Introduction of Intrinsic Kinetics of Protein–Ligand Interactions and Their Implications for Drug Design. Journal of Medicinal Chemistry 61:2292–2302.

Meleddu, R., Petrikaite, V., Distinto, S., Arridu, A., Angius, R., Serusi, L., Škarnulytė, L., Endriulaitytė, U., Paškevičiu̅tė, M., Cottiglia, F., Gaspari, M., Taverna, D., Deplano, S., Fois, B., Maccioni, E., 2018. Investigating the Anticancer Activity of Isatin/Dihydropyrazole Hybrids. ACS Med. Chem. Lett.

Mickevičiūtė, A., Timm, D.D., Gedgaudas, M., Linkuvienė, V., Chen, Z., Waheed, A., Michailovienė, V., Zubrienė, A., Smirnov, A., Čapkauskaitė, E., Baranauskienė, L., Jachno, J., Revuckienė, J., Manakova, E., Gražulis, S., Matulienė, J., Di Cera, E., Sly, W.S., Matulis, D., 2018. Intrinsic thermodynamics of high affinity inhibitor binding to recombinant human carbonic anhydrase IV. European Biophysics Journal 47:271–290.

Smirnov, A., Zubrienė, A., Manakova, E., Gražulis, S., Matulis, D., 2018. Crystal structure correlations with the intrinsic thermodynamics of human carbonic anhydrase inhibitor binding. PeerJ 6:e4412.

Synoradzki, K., Miszta, P., Kazlauskas, E., Mickevičiūtė, A., Michailovienė, V., Matulis, D., Filipek, S., Bieganowski, P., 2018. Interaction of the middle domains stabilizes Hsp90α dimer in a closed conformation with high affinity for p23. Biological Chemistry 399:337–345.

Vidakovic, M., Marinello, J., Lahtela-Kakkonen, M., Matulis, D., Linkuvienė, V., Michel, B.Y., Navakauskienė, R., Christodoulou, M.S., Passarella, D., Klimasauskas, S., Blanquart, C., Cuendet, M., Ovadi, J., Poulain, S., Fontaine-Vive, F., Burger, A., Martinet, N., 2018. New Insights into the Epigenetic Activities of Natural Compounds. OBM Genetics 2:1–1.

Zakšauskas, A., Čapkauskaitė, E., Jezepčikas, L., Linkuvienė, V., Kišonaitė, M., Smirnov, A., Manakova, E., Gražulis, S., Matulis, D., 2018. Design of two-tail compounds with rotationally fixed benzenesulfonamide ring as inhibitors of carbonic anhydrases. European Journal of Medicinal Chemistry 156:61–78.

Čapkauskaitė E., Linkuvienė V., Smirnov A., Milinavičiūtė G., Timm D.D., Kasiliauskaitė A., Manakova E., Gražulis S. and Matulis D. 2017. Combinatorial Design of Isoform-Selective N-Alkylated Benzimidazole-Based Inhibitors of Carbonic Anhydrases. ChemistrySelect 2:5360–5371.

Janoniene A., Liu Z., Baranauskiene L., Mäkilä E., Ma M., Salonen J., Hirvonen J., Zhang H., Petrikaite V. and Santos H.A. 2017. A Versatile Carbonic Anhydrase IX Targeting Ligand-Functionalized Porous Silicon Nanoplatform for Dual Hypoxia Cancer Therapy and Imaging. ACS Appl. Mater. Interfaces 9:13976–13987.

Kazlauskas, E., Brukštus A., Petrikas, H., Petrikaitė V., Čikotienė I. and Matulis D. 2017. Improving the Hsp90 Inhibitors Containing 4-(2,4-Dihydroxyphenyl)-1,2,3-thiadiazole Scaffold: Synthesis, Affinity and Effect on Cancer Cells. Anticancer Agents Med Chem.

Kazokaitė J., Aspatwar A., Parkkila S. and Matulis D. 2017. An update on anticancer drug development and delivery targeting carbonic anhydrase IX. PeerJ 5.

Liu Z., Balasubramanian V., Bhat C., Vahermo M., Mäkilä E., Kemell M., Fontana F., Janoniene A., Petrikaite V., Salonen J., et al. 2017. Quercetin-Based Modified Porous Silicon Nanoparticles for Enhanced Inhibition of Doxorubicin-Resistant Cancer Cells. Advanced Healthcare Materials 6:1601009.

Mickevičiūtė A., Timm D.D., Gedgaudas M., Linkuvienė V., Chen Z., Waheed A., Michailovienė V., Zubrienė A., Smirnov A., Čapkauskaitė E. et al. 2017. Intrinsic thermodynamics of high affinity inhibitor binding to recombinant human carbonic anhydrase IV. Eur Biophys J 1–20.

Rutkauskas K., Zubrienė A., Tumosienė I., Kantminienė K., Mickevičius V. and Matulis D. 2017. Benzenesulfonamides bearing pyrrolidinone moiety as inhibitors of carbonic anhydrase IX: synthesis and binding studies. Medicinal Chemistry Research 26:235–246.

Skvarnavičius G., Toleikis Z., Grigaliūnas M., Smirnovienė J., Norvaišas P., Cimmperman P., Matulis D. and Petrauskas V. 2017. High pressure spectrofluorimetry – a tool to determine protein-ligand binding volume. J. Phys.: Conf. Ser. 950:042001.

Smirnovienė J., Smirnovas V. and Matulis D. 2017. Picomolar inhibitors of carbonic anhydrase: Importance of inhibition and binding assays. Analytical Biochemistry 522:61–72.

Vaškevičienė I., Paketurytė V., Zubrienė A., Kantminienė K., Mickevičius V. and Matulis D. 2017. N-Sulfamoylphenyl- and N-sulfamoylphenyl-N-thiazolyl-β-alanines and their derivatives as inhibitors of human carbonic anhydrases. Bioorg. Chem. 75:16–29.

Zhang H., Liu D., Wang L., Liu Z., Wu R., Janoniene A., Ma M., Pan G., Baranauskiene L., Zhang L., et al. 2017. Microfluidic Encapsulation of Prickly Zinc-Doped Copper Oxide Nanoparticles with VD1142 Modified Spermine Acetalated Dextran for Efficient Cancer Therapy. Adv Healthc Mater.

Zubrienė A., Smirnov A., Dudutienė V., Timm D.D., Matulienė J., Michailovienė V., Zakšauskas A., Manakova E., Gražulis S. and Matulis D. 2017. Intrinsic Thermodynamics and Structures of 2,4- and 3,4-Substituted Fluorinated Benzenesulfonamides Binding to Carbonic Anhydrases. ChemMedChem 12:161–176.

Juozapaitienė V., Bartkutė B., Michailovienė V., Zakšauskas A., Baranauskienė L., Satkūnė, S. and Matulis D. 2016. Purification, enzymatic activity and inhibitor discovery for recombinant human carbonic anhydrase XIV. Journal of Biotechnology 240:31–42.

Kasiliauskaitė A., Časaitė V., Juozapaitienė V., Zubrienė A., Michailovienė V., Revuckienė J., Baranauskienė L., Meškys R. and Matulis D. 2016. Thermodynamic characterization of human carbonic anhydrase VB stability and intrinsic binding of compounds. Journal of Thermal Analysis and Calorimetry 123:2191–2200.

Kazokaitė J., Aspatwar A., Kairys V., Parkkila S. and Matulis D. 2016. Fluorinated benzenesulfonamide anticancer inhibitors of carbonic anhydrase IX exhibit lower toxic effects on zebrafish embryonic development than ethoxzolamide. Drug and Chemical Toxicology 1–11.

Kazokaitė J., Ames, S., Becker, H.M., Deitmer, J.W. and Matulis D. 2016. Selective inhibition of human carbonic anhydrase IX in Xenopus oocytes and MDA-MB-231 breast cancer cells. Journal of Enzyme Inhibition and Medicinal Chemistry 31, 38–44.

Linkuvienė V., Matulienė J., Juozapaitienė V., Michailovienė V., Jachno, J. and Matulis D. 2016. Intrinsic thermodynamics of inhibitor binding to human carbonic anhydrase IX. Biochimica et Biophysica Acta (BBA) - General Subjects 1860:708–718.

Linkuvienė V., Krainer G., Chen W.-Y. and Matulis D. 2016. Isothermal titration calorimetry for drug design: Precision of the enthalpy and binding constant measurements and comparison of the instruments. Analytical Biochemistry 515:61–64.

Matulis D. 2016. Selective Precipitation of Proteins. In Current Protocols in Protein Science, J.E. Coligan, B.M. Dunn, D.W. Speicher and P.T. Wingfield, eds. (Hoboken, NJ, USA: John Wiley & Sons, Inc.), p. 4.5.1-4.5.37.

Myrianthopoulos V., Cartron P.F., Liutkevičiūtė Z., Klimašauskas S., Matulis D., Bronner C., Martinet N. and Mikros E. 2016. Tandem virtual screening targeting the SRA domain of UHRF1 identifies a novel chemical tool modulating DNA methylation. European Journal of Medicinal Chemistry 114:390–396.

Paliulis E., Paketuryte V. and Matulis D. 2016. Protease, Amylase and Lactase Enzyme Stability in Gastroval® Capsules after Incubation at Acidic pH and Elevated Temperature. Biochemistry & Physiology: Open Access 05.

Petrauskas V., Baranauskienė L., Zubrienė A. and Matulis D. 2016. Isothermal Titration Calorimetry and Fluorescent Thermal and Pressure Shift Assays in Protein-Ligand Interactions. In Biocalorimetry, (CRC Press), p. 261-280.

Sacconnay L., Ryckewaert L., Randazzo G.M., Petit C., Passos C.D.S., Jachno J., Michailovienė V., Zubrienė A., Matulis D., Carrupt P.-A., et al. 2016. 5-Benzylidene-hydantoin is a new scaffold for SIRT inhibition: From virtual screening to activity assays. European Journal of Pharmaceutical Sciences 85:59–67.

Talibov V.O., Linkuvienė V., Matulis D. and Danielson U.H. 2016. Kinetically Selective Inhibitors of Human Carbonic Anhydrase Isozymes I, II, VII, IX, XII and XIII. J Med Chem 59:2083–2093.

Toleikis Z., Sirotkin V.A., Skvarnavičius G., Smirnovienė J., Roumestand C., Matulis D. and Petrauskas, V. 2016. Volume of Hsp90 Protein–Ligand Binding Determined by Fluorescent Pressure Shift Assay, Densitometry and NMR. The Journal of Physical Chemistry B 120:9903–9912.

Wagner T., Greschik H., Burgahn T., Schmidtkunz K., Schott A.-K., McMillan J., Baranauskienė L., Xiong Y., Fedorov O., Jin J. et al. 2016. Identification of a small-molecule ligand of the epigenetic reader protein Spindlin1 via a versatile screening platform. Nucleic Acids Research 44:e88–e88.

Morkūnaitė V., Gylytė J., Zubrienė A., Baranauskienė L., Kišonaitė M., Michailovienė V., Juozapaitienė V., Todd M.J., Matulis D. 2015. Intrinsic thermodynamics of sulfonamide inhibitor binding to human carbonic anhydrases I and II. J Enzyme Inhib Med Chem, 30:204-11.

Redhead M., Satchell R., Morkūnaitė V., Swift D., Petrauskas V., Golding E., Onions S., Matulis D., Unitt J. 2015. A combinatorial biophysical approach; FTSA and SPR for identifying small molecule ligands and PAINs. Anal Biochem, 479:63-73.

Dudutienė V., Zubrienė A., Smirnov A., Timm D., Smirnovienė J., Kazokaitė J., Michailovienė V., Zakšauskas A., Manakova E., Gražulis S., Matulis D. 2015. Functionalization of fluorinated benzenesulfonamides and their inhibitory properties toward carbonic anhydrases. ChemMedChem, 10:662-87.

Kazokaitė J., Milinavičiūtė G., Smirnovienė J., Matulienė J., Matulis D. 2015. Intrinsic binding of 4-substituted-2,3,5,6-tetrafluorobenezenesulfonamides to native and recombinant human carbonic anhydrase VI. FEBS J, 282:972-83.

Pilipuitytė V., Matulis D. 2015. Intrinsic thermodynamics of trifluoromethanesulfonamide and ethoxzolamide binding to human carbonic anhydrase VII. J Mol Recognit, 28:166-72.

Zubrienė A., Smirnovienė J., Smirnov A., Morkūnaitė V., Michailovienė V., Jachno J., Juozapaitienė V., Norvaišas P., Manakova E., Gražulis S., Matulis D. 2015. 4-substituted-2,3,5,6-tetrafluorobenzenesulfonamide binding to carbonic anhydrases by isothermal titration calorimetry. Biophys Chem, 205:51-65.

Dudutienė V., Matulienė J., Smirnov A., Timm D.D., Zubrienė A., Baranauskienė L., Morkūnaite V., Smirnovienė J., Michailovienė V., Juozapaitienė V., Mickevičiūtė A., Kazokaitė J., Bakšytė S., Kasiliauskaitė A., Jachno J., Revuckienė J., Kišonaitė M., Pilipuitytė V., Ivanauskaitė E., Milinavičiūtė G., Smirnovas V., Petrikaitė V., Kairys V., Petrauskas V., Norvaišas P., Lingė D., Gibieža P., Capkauskaitė E., Zakšauskas A., Kazlauskas E., Manakova E., Gražulis S., Ladbury J.E., Matulis D. 2014. Discovery and characterization of novel selective inhibitors of carbonic anhydrase IX. J Med Chem. 57:9435-46.

Rutkauskas K., Zubrienė A., Tumosienė I., Kantminienė K., Kažemėkaitė M., Smirnov A., Kazokaitė J., Morkūnaitė V., Čapkauskaitė E., Manakova E., Gražulis S., Beresnevičius Z.J., Matulis D. 2014. 4-amino-substituted benzenesulfonamides as inhibitors of human carbonic anhydrases. Molecules. 19:17356-80.

Morkūnaitė V., Baranauskienė L., Zubrienė A., Kairys V., Ivanova J., Trapencieris P., Matulis D. 2014. Saccharin sulfonamides as inhibitors of carbonic anhydrases I, II, VII, XII, and XIII. Biomed Res Int, 2014:638902.

Petrikaite V., Matulis D. 2014 Inhibitor binding to Hsp90: a review of thermodynamic, kinetic, enzymatic, and cellular assays. Curr Protein Pept Sci, 15:256-82.

Zubrienė A., Čapkauskaitė E., Gylytė J., Kišonaitė M., Tumkevičius S., Matulis D. 2014. Benzenesulfonamides with benzimidazole moieties as inhibitors of carbonic anhydrases I, II, VII, XII and XIII. J Enzyme Inhib Med Chem, 29:124-31.

Kišonaitė M., Zubrienė A., Capkauskaitė E., Smirnov A., Smirnovienė J., Kairys V., Michailovienė V., Manakova E., Gražulis S., Matulis D. 2014. Intrinsic Thermodynamics and Structure Correlation of Benzenesulfonamides with a Pyrimidine Moiety Binding to Carbonic Anhydrases I, II, VII, XII, and XIII. PLoS One, 9:e114106.

Dekaminaviciute, D., Lasickiene, R., Parkkila, S., Jogaite, V., Matuliene, J., Matulis, D. and Zvirbliene, A. 2014. Development and Characterization of New Monoclonal Antibodies against Human Recombinant CA XII. BioMed Research International, 2014:309307.

Jogaitė V., Zubrienė A., Michailovienė V., Gylytė J., Morkūnaitė V., Matulis D. 2013. Characterization of human carbonic anhydrase XII stability and inhibitor binding. Bioorg Med Chem, 21:1431-6.

Dudutienė V., Zubrienė A., Smirnov A., Gylytė J., Timm D., Manakova E., Gražulis S., Matulis D. 2013. 4-Substituted-2,3,5,6-tetrafluorobenzenesulfonamides as inhibitors of carbonic anhydrases I, II, VII, XII, and XIII. Bioorg Med Chem, 21:2093-106.

Čapkauskaitė, E., Zubrienė, A., Smirnov, A., Torresan, J., Kišonaitė, M., Kazokaitė, J., Gylytė, J., Michailovienė, V., Jogaitė, V., Manakova, E.,  Gražulis, S., Tumkevičius, S., Matulis, D. 2013. Benzenesulfonamides with pyrimidine moiety as inhibitors of human carbonic anhydrases I, II, VI, VII, XII, and XIII. Bioorg Med Chem, 21:6937-6947

Petrauskas, V., Gylytė, J., Toleikis, Z., Cimmperman, P., Matulis, D. 2013. Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature.  Eur Biophys J, 42:355-362.

Baranauskienė, L., Matulis, D. 2012. Intrinsic thermodynamics of ethoxzolamide inhibitor binding to human carbonic anhydrase XIII.  BMC Biophys, 5:12.

Pirrie, L., McCarthy, A., Major, L., Morkūnaitė, V., Zubrienė, A., Matulis, D., Lain, S., Lebl, T., Westwood, N. 2012. Discovery and Validation of SIRT2 Inhibitors Based on Tenovin-6: Use of a 1H-NMR Method to Assess Deacetylase Activity. Molecules, 17:12206-12224.

Sharp, S., and Roe, M., Kazlauskas, E., Čikotienė, I., Workman, P., Matulis, D., Prodromou, C. 2012. Co-Crystalization and In Vitro Biological Characterization of 5-Aryl-4-(5-Substituted-2-4-Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors. PLoS ONE, 7:e44642.

Čapkauskaitė, E., Zubrienė, A., Baranauskienė, L., Tamulaitienė, G., Manakova, E., Kairys, V., Gražulis, S., Tumkevičius, S., Matulis, D. 2012. Design of [(2-pyrimidinylthio)acetyl]benzenesulfonamides as inhibitors of human carbonic anhydrases. European Journal of Medicinal Chemistry, 51:259-270.

Toleikis, Z. and Cimmperman, P. and Petrauskas, V. and Matulis, D. 2012 Serum albumin ligand binding volumes using high pressure denaturation. Journal of Chemical Thermodynamics, 52:24-29.

Norvaišas, P., Petrauskas, V., Matulis, D. 2012 Thermodynamics of cationic and anionic surfactant interaction. J Phys Chem B, 116:2138-2144

Labanauskas, L., Dudutiene, V., Urbelis, G., Sarlauskas, J., Sudzius, J., Matulis, D., Striela, R., Zilinskas, A. 2012. Synthesis of substituted 2λ4δ2-[1,2,3]thiadiazolo[3,4-c]benzimid-azoles and 2λ4δ2-[1,2,3,5]thiatriazolo[3,4-c]benzimidazoles. ARKIVOC, VIII:17-26

Giessrigl, B., Krieger, S., Rosner, M., Huttary, N., Saiko, P., Alami, M., Messaoudi, S., Peyrat, J., and Maciuk, A., Gollinger, M., Kopf, S., Kazlauskas, E., Mazal, P., Szekeres, T., Hengstschläger, M., Matulis, D., Jäger, W., Krupitza, G. 2012. Hsp90 stabilises Cdc25A and counteracts heat shock mediated Cdc25A degradation and cell cycle attenuation in pancreatic carcinoma cells. Hum Mol Genet, 21: 4615-4627.

Kazlauskas, E., Petrikaite, V., Michailoviene, V., Revuckiene, J., Matuliene, J., Grinius, L., Matulis, D. 2012. Thermodynamics of Aryl-Dihydroxyphenyl-Thiadiazole Binding to Human Hsp90. PLoS ONE, 7:e36899.

Cimmperman, P. and Matulis, D. 2011. Protein Thermal Denaturation Measurements via a Fluorescent Dye. Invited review to the book: RSC Biomolecular Sciences No. 22. Biophysical Approaches Determining Ligand Binding to Biomolecular Targets: Detection, Measurement and Modelling. Edited by A. Podjarny, A. Dejaegere, and B. Kieffer. Royal Society of Chemistry. Chapter 8.

Petrikaite, V. and Matulis, D. 2011. Binding of natural and synthetic inhibitors to human heat shock protein 90 and their clinical application. Medicina (Kaunas), 47:413-420.

Zubriene, A. and Kazlauskas, E. and Baranauskiene, L. and Petrauskas, V. and Matulis, D. 2011. Isothermal titration calorimetry and thermal shift assay in drug design. European pharmaceutical review, 16:56-59.

Toleikis, Z., Cimmperman, P., Petrauskas, V., Matulis, D. 2011. Determination of the volume changes induced by ligand binding to heat shock protein 90 using high-pressure denaturation. Anal Biochem. 413(2):171-178.

Petrikaite, V. and Matulis, D. 2011. Thermodynamics of Natural and Synthetic Inhibitor Binding to Human Hsp90. Knygoje "Application of Thermodynamics to Biological and Materials Science" Redag. Mizutani Tadashi, p. 77-92, ISBN: 978-953-307-980-6.

Rink, C., Sasse, F., Zubrienė, A., Matulis, D., Maier, ME. 2010. Probing the influence of an allylic methyl group in zearalenone analogues on binding to Hsp90. Chemistry. 16(48):14469-14478.

Zubrienė, A., Gutkowska, M., Matulienė, J., Chaleckis, R., Michailovienė, V., Voroncova, A., Venclovas, C., Zylicz, A., Zylicz, M., Matulis, D. 2010. Thermodynamics of radicicol binding to human Hsp90 alpha and beta isoforms. Biophys Chem, 152(1-3):153-163.

Čapkauskaitė, E., Baranauskienė, L., Golovenko, D., Manakova, E., Gražulis, S., Tumkevičius, S., Matulis, D. 2010. Indapamide-like benzenesulfonamides as inhibitors of carbonic anhydrases I, II, VII, and XIII. Bioorg Med Chem, 18(21):7357-7364.

Sūdžius, J., Baranauskienė, L., Golovenko, D., Matulienė, J., Michailovienė, V., Torresan, J., Jachno, J., Sukackaitė, R., Manakova, E., Gražulis, S., Tumkevičius, S., Matulis, D. 2010. 4-[N-(substituted 4-pyrimidinyl)amino]benzenesulfonamides as inhibitors of carbonic anhydrase isozymes I, II, VII, and XIII. Bioorg Med Chem, 18(21):7413-7421.

Baranauskienė, L., Hilvo, M., Matulienė, J., Golovenko, D., Manakova, E., Dudutienė, V., Michailovienė, V., Torresan, J., Jachno, J., Parkkila, S., Maresca, A., Supuran, C. T., Gražulis, S., and Matulis, D. 2010. Inhibition and binding studies of carbonic anhydrase isozymes I, II and IX with benzimidazo[1,2-c][1,2,3]thiadiazole-7-sulfonamides, J Enz Inhib Med Chem, 25(6):863-870.

Zurawska, A., Urbanski, J., Matulienė, J., Baraniak, J., Klejman, M. P., Filipek, S., Matulis, D., Bieganowski, P. 2010, Mutations that increase both Hsp90 ATPase activity in vitro and Hsp90 drug resistance in vivo. BBA – Molec Cell Res, 1803(5):575-583.

Labanauskas, L., Dudutienė, V., Matulis, D., Urbelis, G. 2009, Synthesis of a new heterocyclic system: 3 phenylbenzimidazo [1,2-c]-[1,2,3]selenadiazole . Chem Heterocycl Comp No. 9, 1435-1436.

Ugele, M., Sasse, F., Knapp, S., Fedorov, O., Zubriene, A., Matulis, D., Maier ME. 2009. Propionate Analogues of Zearalenone Bind to Hsp90. Chembiochem, 10(13):2203-2212.

Baranauskienė, L., Petrikaitė, V., Matulienė, J., Matulis, D. 2009. Titration Calorimetry Standards and the Precision of Isothermal Titration Calorimetry Data. Int J Mol Sci, 10:2752-2762.

Zubrienė, A., Matulienė, J., Baranauskienė, L., Jachno, J., Torresan, J., Michailovienė, V., Cimmperman, P., Matulis, D. 2009. Measurement of Nanomolar Dissociation Constants by Titration Calorimetry and Thermal Shift Assay – Radicicol Binding to Hsp90 and Ethoxzolamide Binding to CAII. Int J Mol Sci, 10:2662-2680.

Cikotiene, I., Kazlauskas, E., Matuliene, J., Michailoviene, V.,Torresan, J., Jachno, J., Matulis, D. 2009. 5-Aryl-4-(5-substituted-2,4- dihydroxyphenyl)-1,2,3-thiadiazoles as inhibitors of Hsp90 chaperone. Bioorg Med Chem Lett, 19:1089-1092.

 Hilvo, M., Baranauskiene, L., Salzano, A.M., Scaloni, A., Matulis, D., Innocenti, A., Scozzafava, A., Monti, S.M., Di Fiore, A., De Simone, G., Lindfors, M., Jänis, J., Valjakka, J., Pastoreková, S., Pastorek, J., Kulomaa, M.S., Nordlund, H.R., Supuran, C.T., Parkkila, S. 2008 Biochemical characterization of CA IX: one of the most active carbonic anhydrase isozymes J Biol Chem, 283: 27799-27809.

Cimmperman, P., Baranauskiene, L., Jachimoviciute, S.,Jachno, J., Torresan, J., Michailoviene, V., Matuliene, J., Sereikaite, J., Bumelis, V., Matulis, D. 2008. A Quantitative Model of Thermal Stabilization and Destabilization of Proteins by Ligands. Biophys J, 95:3222-3231.

Baranauskienė, L., Matulienė, J., Matulis, D. 2008. Determination of the thermodynamics of carbonic anhydrase acid-unfolding by titration calorimetry. J Biochem Biophys Meth, 70:1043–1047.

Zaveckas, M., Žvirblienė, A., Žvirblis, G., Chmieliauskaitė, V., Bumelis, V., Pesliakas, H. 2007. Effect of surface histidine mutations and their number on the partitioning and refolding of recombinant human granulocyte-colony stimulating factor (Cys17Ser) in aqueous two-phase systems containing chelated metal ions. J Chromatogr B, 852:409-419.

Dudutienė, V., Baranauskienė, L., Matulis, D. 2007. Benzimidazo[1,2-c][1,2,3]thiadiazole-7-sulfonamides as inhibitors of carbonic anhydrase. Bioorg Med Chem Lett, 17: 3335-3338.

Matulis, D., Kranz, J., Salemme, F.R., and Todd, M.J. 2005. Thermodynamic stability of carbonic anhydrase: measurements of binding affinity and stoichiometry using ThermoFluor. Biochemistry, 44, 5258-66.

Matulis, D. and Todd, M. 2004. Thermodynamics – structure correlations of sulfonamide inhibitor binding to carbonic anhydrase. In Biocalorimetry 2“, eds. Ladbury, J.E. and Doyle, M.L. Wiley. 107-132.

Matulis, D., Rouzina, I., and Bloomfield, V. 2002. Thermodynamics of cationic lipid binding to DNA and DNA condensation: Roles of electrostatics and hydrophobicity. J Am Chem Soc, 124, 7331-7342.

Matulis, D., and Bloomfield, V. 2001. Thermodynamics of the hydrophobic effect. I. Coupling of aggregation and pKa shifts in solutions of aliphatic amines. Biophys Chem, 93: 37-51.

Matulis, D., and Bloomfield, V. 2001. Thermodynamics of the hydrophobic effect. II. Calorimetric measurement of enthalpy, entropy, and heat capacity of aggregation of alkylamines and long aliphatic chains. Biophys Chem, 93: 53-65.

Matulis, D. 2001. Thermodynamics of the hydrophobic effect. III. Condensation and aggregation of alkanes, alcohols, and alkylamines. Biophys Chem, 93: 67-82.

Lovrien, R., Wu, C., and Matulis, D. 2000. Ligand - protein coprecipitative isolation by matrix stacking and entanglement. Sep Sci Technol, 35(11): 1795-1811.

Matulis, D., Rouzina, I., and Bloomfield, V. 2000. Thermodynamics of DNA binding and condensation: isothermal titration calorimetry and electrostatic mechanism. J Mol Biol, 296: 1053-1063.

Matulis, D., Baumann, C., Bloomfield, V., and Lovrien, R. 1999. 1-Anilino-8-naphthalene sulfonate as a protein conformational tightening agent. Biopol, 49: 451-458.

Matulis, D., Wu, C., Pham, T., Guy, C., and, Lovrien, R. 1999. Protection of enzymes by aromatic sulfonates from inactivation by acid and elevated temperatures. J Molec Catalysis B: Enzymatic. 7: 21-36.

Matulis, D., and Lovrien, R. 1998. 1-Anilino-8-naphthalene sulfonate anion-protein binding depends primarily on ion pair formation. Biophys J, 74: 422-429.

Wu, C., Lovrien, R., and Matulis, D. 1998. Lectin coprecipitative isolation from crudes by little rock orange ligand. Analyt Biochem, 257: 33-39.

Rubikas, J., and Matulis, D. 1998. Nickel resistance in Escherichia coli V38 isolated from city sewage sludge. Ekologija. 9: 24-28.

Rubikas, J., and Matulis, D. 1998. Nickel ion efflux is the main mechanism of resistance in Escherichia coli V38. Ekologija, 9: 29-32.

Matulis, D., Lovrien, R. 1997. Selective Precipitation of Proteins. Curr Prot Prot Sc: 4.5.1-4.5.36.

Rubikas, J., Matulis, D., Leipus, A., and Urbaitienė, D. 1997. Nickel resistance in Escherichia Coli V38 is dependent on the concentration used for induction. FEMS Microbiol Lett, 155: 193-198.

Matulis, D., Richardson, T., and Lovrien, R. 1996. Coprecipitation of proteins with matrix ligands: scaleable protein isolation. J Molec Recogn, 9: 433-443.

Matulis, D., Lovrien, R. 1995. Assays for Total Protein. Curr Prot Prot Sc: 3.4.1-3.4.4.

Petrikaite, V., Kazlauskas, E., Matuliene, J., Matulis, D. 2011. Development of Hsp90 inhibitors as anticancer compounds. F1000 Posters.

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